Selamat datang di CucurbitAgent

Platform cerdas generasi baru untuk riset Cucurbitaceae, mengintegrasikan model bahasa besar dengan data multi-omik.

Cucurbit

Tentang CucurbitAgent

Cucurbitaceae —semangka, mentimun, melon, labu, pare, serta tanaman terkait— merupakan tanaman penting di seluruh dunia. Dataset genom dan penelitian yang telah diterbitkan menyediakan informasi berharga untuk memahami fungsi gen dan memperbaiki sifat tanaman. Namun, sumber daya ini tersebar di berbagai basis data dan format, dan pengenal gen dapat berbeda antar versi genom. Peneliti sering kali perlu menelusuri beberapa sumber untuk menghubungkan suatu gen dengan pola ekspresinya, varian genetiknya, struktur protein yang diprediksi, dan temuan yang telah dipublikasikan.

Dikembangkan oleh Beijing Vegetable Research Center (BVRC), Beijing Academy of Agriculture and Forestry Sciences (BAAFS), CucurbitAgent menghimpun sumber daya multi-omika dari sembilan spesies cucurbitaceae budidaya. Platform ini mengintegrasikan anotasi gen dan homolog kandidat, pemetaan ID gen antarversi, varian genetik alami, profil ekspresi jaringan dan hubungan ko-ekspresi, struktur protein prediksi ESMFold, situs pengikatan prediksi GPSite, serta korpus literatur terkurasi.

Pengguna dapat menjelajahi sumber daya ini dengan mengajukan pertanyaan dalam bahasa alami. Agen AI percakapan memilih alat yang relevan, mengambil informasi dari basis data di baliknya, dan mengintegrasikan hasilnya ke dalam jawaban yang tertaut ke catatan sumber. Peneliti juga dapat langsung mencari di modul Gene, Expression, Protein, dan Literatur serta mengunduh sumber daya genom yang tersedia.

Dengan menghubungkan sumber bukti yang saling melengkapi ini, CucurbitAgent membantu peneliti menyelidiki gen kandidat, menafsirkan pola ekspresi, memeriksa varian dalam konteks sekuens dan strukturnya, serta mengembangkan hipotesis untuk studi fungsional dan perbaikan tanaman.

Literatur Terbaru

(2026-11-02)
Superior Therapeutic Efficacy and Reduced Systemic Toxicity of a Cucurbit[7]uril-Camptothecin Supramolecular Complex in Colorectal Cancer.
Molecular pharmaceutics | 2026 Nov 2

The clinical application of camptothecin (CPT) is limited by poor solubility and severe toxicity. This study compares the therapeutic performance of a cucurbit[7]uril-based CPT complex (CB[7]-CPT) with free CPT and β-cyclodextrin-CPT (β-CD-CPT) in colorectal cancer models. In vitro, free CPT, β-CD-CPT, and CB[7]-CPT were tested on normal LO2 and cancerous HCT116 cells. CB[7] encapsulation reduced toxicity toward normal LO2 cells (IC50: 0.47 μM, ∼25-fold higher than the IC50 of free CPT) while improving potency against HCT116 cells (CB[7]-CPT IC50: 0.24 μM; free CPT IC50: 0.55 μM, ∼2-fold more potent than free CPT). The selectivity index improved from 0.034 (CPT) to 1.976 (CB[7]-CPT), indicating a wide safety margin. Apoptosis assays confirmed that CB[7]-CPT induced significantly greater apoptotic cell death at equivalent concentrations than either free CPT or β-CD-CPT. In HCT116 xenograft models, CB[7]-CPT achieved a tumor inhibition rate of 76%, markedly outperforming free CPT (46%) and β-CD-CPT (62%). This enhanced efficacy was accompanied by increased intratumoral apoptosis, reduced proliferation, and decreased microvessel density. Importantly, CB[7]-CPT markedly attenuated liver, kidney, and gastrointestinal toxicity typically associated with CPT exposure. Pharmacokinetically, CB[7]-CPT displayed a 1.94-fold higher AUC and a 1.59-fold prolonged elimination half-life relative to free CPT, reflecting extended circulation and improved systemic exposure. These findings collectively establish CB[7]-CPT as a highly effective and safer alternative not only to free CPT but also to conventional cyclodextrin-based formulations, demonstrating enhanced selectivity, robust pro-apoptotic activity, and a superior safety profile.

Effects of LD20 exposure to insecticides on the reproductive fitness of Zeugodacus cucurbitae (Diptera: Tephritidae).
Journal of economic entomology | 2026 Nov 2

The melon fly, Zeugodacus cucurbitae (Coquillett), is a major pest of cucurbitaceous fruits, and insecticides are widely used for its management. However, sometimes environmental factors may reduce insecticide deposits below lethal levels, and adult flies may receive only partial exposure during spraying, resulting in exposure to non-lethal doses. This study evaluated the reproductive fitness of Z. cucurbitae survivors following LD20 exposure to commercially available formulations of fipronil, spinosad, and malathion. Adult flies surviving topical LD20 treatment were assigned to 4 treatment combinations: (1) treated female and treated male (F+M+), (2) treated female and untreated male (F+M-), (3) untreated female and treated male (F-M+), and (4) untreated female and untreated male (F-M-). Malathion (0.18 μg/fly) exerted the most pronounced effects on Z. cucurbitae, significantly reducing mating frequency, progeny production, and adult longevity of treated flies, while increasing the proportion of malformed offspring. In contrast, fipronil (0.04 μg/fly) and spinosad (0.005 μg/fly) exhibited significant effects only when both sexes were treated. Notably, LD20 treatment with malathion enhanced the mating competitiveness of treated female flies, indicating a potential stimulatory effect. The findings suggest that LD20 of malathion had a significant impact on the reproductive fitness of melon flies, even when only 1 of the sexes was treated. In contrast, spinosad and fipronil produced adverse effects only when both sexes were treated, with minimal effects observed when only 1 sex was treated.

De novo creation of solid-placenta, few-seeded melon via targeted mutation of CmSLM/CmAGL11
Molecular Horticulture | 2026-11-01

šŸ”— Sumber Daya Eksternal

Sitasi

Jika Anda menganggap platform ini bermanfaat bagi riset Anda, mohon sitasi:

CucurbitAgent: An AI agent for exploring cucurbit multi-omics resources. Rong Zhang, Jian Zhang, Yuming Zhang, et al. bioRxiv 2026.10.09.758138; doi: https://doi.org/10.64898/2026.10.09.758138