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面向葫芦科研究的新一代智能平台,将大语言模型与多组学数据深度整合。

Cucurbit

关于 CucurbitAgent

葫芦科作物——西瓜、黄瓜、甜瓜、南瓜、苦瓜及相关作物——是世界范围内的重要作物。基因组数据与已发表的研究为理解基因功能、改良作物性状提供了宝贵信息。然而,这些资源分散在不同的数据库与格式之中,基因编号也随基因组版本而异。研究者往往需要查阅多个来源,才能将一个基因与其表达模式、遗传变异、预测蛋白结构及已发表的研究发现联系起来。

CucurbitAgent 由北京市农林科学院(BAAFS)北京蔬菜研究中心(BVRC)开发,汇集了九个栽培葫芦科物种的多组学资源。平台整合了基因注释与候选同源基因、跨版本基因编号映射、自然遗传变异、组织表达谱与共表达关系、ESMFold 预测的蛋白三维结构、GPSite 预测的结合位点,以及人工精选的文献语料库。

用户可以通过自然语言提问来探索这些资源:对话式 AI 智能体会自动选择合适的工具,从底层数据库中检索信息,并把结果整合成附带来源记录的回答。研究者也可以直接使用“基因”“表达”“蛋白”“文献”模块进行检索,并下载可用的基因组资源。

通过打通这些互补的证据来源,CucurbitAgent 帮助研究者挖掘候选基因、解读表达模式、在序列与结构背景下审视变异,并为功能研究与作物改良形成研究假说。

最新文献

(2026-11-02)
Superior Therapeutic Efficacy and Reduced Systemic Toxicity of a Cucurbit[7]uril-Camptothecin Supramolecular Complex in Colorectal Cancer.
Molecular pharmaceutics | 2026 Nov 2

The clinical application of camptothecin (CPT) is limited by poor solubility and severe toxicity. This study compares the therapeutic performance of a cucurbit[7]uril-based CPT complex (CB[7]-CPT) with free CPT and β-cyclodextrin-CPT (β-CD-CPT) in colorectal cancer models. In vitro, free CPT, β-CD-CPT, and CB[7]-CPT were tested on normal LO2 and cancerous HCT116 cells. CB[7] encapsulation reduced toxicity toward normal LO2 cells (IC50: 0.47 μM, ∼25-fold higher than the IC50 of free CPT) while improving potency against HCT116 cells (CB[7]-CPT IC50: 0.24 μM; free CPT IC50: 0.55 μM, ∼2-fold more potent than free CPT). The selectivity index improved from 0.034 (CPT) to 1.976 (CB[7]-CPT), indicating a wide safety margin. Apoptosis assays confirmed that CB[7]-CPT induced significantly greater apoptotic cell death at equivalent concentrations than either free CPT or β-CD-CPT. In HCT116 xenograft models, CB[7]-CPT achieved a tumor inhibition rate of 76%, markedly outperforming free CPT (46%) and β-CD-CPT (62%). This enhanced efficacy was accompanied by increased intratumoral apoptosis, reduced proliferation, and decreased microvessel density. Importantly, CB[7]-CPT markedly attenuated liver, kidney, and gastrointestinal toxicity typically associated with CPT exposure. Pharmacokinetically, CB[7]-CPT displayed a 1.94-fold higher AUC and a 1.59-fold prolonged elimination half-life relative to free CPT, reflecting extended circulation and improved systemic exposure. These findings collectively establish CB[7]-CPT as a highly effective and safer alternative not only to free CPT but also to conventional cyclodextrin-based formulations, demonstrating enhanced selectivity, robust pro-apoptotic activity, and a superior safety profile.

Effects of LD20 exposure to insecticides on the reproductive fitness of Zeugodacus cucurbitae (Diptera: Tephritidae).
Journal of economic entomology | 2026 Nov 2

The melon fly, Zeugodacus cucurbitae (Coquillett), is a major pest of cucurbitaceous fruits, and insecticides are widely used for its management. However, sometimes environmental factors may reduce insecticide deposits below lethal levels, and adult flies may receive only partial exposure during spraying, resulting in exposure to non-lethal doses. This study evaluated the reproductive fitness of Z. cucurbitae survivors following LD20 exposure to commercially available formulations of fipronil, spinosad, and malathion. Adult flies surviving topical LD20 treatment were assigned to 4 treatment combinations: (1) treated female and treated male (F+M+), (2) treated female and untreated male (F+M-), (3) untreated female and treated male (F-M+), and (4) untreated female and untreated male (F-M-). Malathion (0.18 μg/fly) exerted the most pronounced effects on Z. cucurbitae, significantly reducing mating frequency, progeny production, and adult longevity of treated flies, while increasing the proportion of malformed offspring. In contrast, fipronil (0.04 μg/fly) and spinosad (0.005 μg/fly) exhibited significant effects only when both sexes were treated. Notably, LD20 treatment with malathion enhanced the mating competitiveness of treated female flies, indicating a potential stimulatory effect. The findings suggest that LD20 of malathion had a significant impact on the reproductive fitness of melon flies, even when only 1 of the sexes was treated. In contrast, spinosad and fipronil produced adverse effects only when both sexes were treated, with minimal effects observed when only 1 sex was treated.

De novo creation of solid-placenta, few-seeded melon via targeted mutation of CmSLM/CmAGL11
Molecular Horticulture | 2026-11-01

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如果本平台对你的研究有所帮助,请引用:

CucurbitAgent: An AI agent for exploring cucurbit multi-omics resources. Rong Zhang, Jian Zhang, Yuming Zhang, et al. bioRxiv 2026.10.09.758138; doi: https://doi.org/10.64898/2026.10.09.758138